epivizrChart
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see epivizrChart.
R interface to epiviz web components
Bioconductor version: 3.9
This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.
Author: Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("epivizrChart")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizrChart")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epivizrChart")| Introduction to epivizrChart | HTML | R Script |
| Visualizing `RangeSummarizedExperiment` objects Shiny Apps using epivizrChart | HTML | R Script |
| Visualizing Files with epivizrChart | HTML | R Script |
| Visualizing genomic data in Shiny Apps using epivizrChart | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0) |
| Imports | epivizrData(>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epivizrChart_1.6.0.tar.gz |
| Windows Binary | epivizrChart_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | epivizrChart_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epivizrChart |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epivizrChart |
| Bioc Package Browser | https://code.bioconductor.org/browse/epivizrChart/ |
| Package Short Url | https://bioconductor.org/packages/epivizrChart/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |