destiny
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see destiny.
Creates diffusion maps
Bioconductor version: 3.9
Create and plot diffusion maps.
Author: Philipp Angerer [cre, aut] , Laleh Haghverdi [ctb], Maren Büttner [ctb] , Fabian Theis [ctb] , Carsten Marr [ctb] , Florian Büttner [ctb]
Maintainer: Philipp Angerer <philipp.angerer at helmholtz-muenchen.de>
Citation (from within R, enter
citation("destiny")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("destiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("destiny")
Diffusion-Map-recap.pdf | |
Diffusion-Maps.pdf | |
DPT.pdf | |
Global-Sigma.pdf | |
tidyverse.pdf | |
Reference Manual | |
NEWS | Text |
Details
biocViews | CellBasedAssays, CellBiology, Clustering, Software, Visualization |
Version | 2.14.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
License | GPL |
Depends | R (>= 3.3.0) |
Imports | methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d |
System Requirements | C++11 |
URL | https://github.com/theislab/destiny |
Bug Reports | https://github.com/theislab/destiny/issues |
See More
Suggests | nbconvertR, testthat, FNN, tidyr, SingleCellExperiment |
Linking To | Rcpp, RcppEigen, grDevices |
Enhances | rgl, SingleCellExperiment |
Depends On Me | |
Imports Me | phemd |
Suggests Me | CellTrails, monocle, scater, slingshot |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | destiny_2.14.0.tar.gz |
Windows Binary | destiny_2.14.0.zip |
Mac OS X 10.11 (El Capitan) | destiny_2.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/destiny |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/destiny |
Bioc Package Browser | https://code.bioconductor.org/browse/destiny/ |
Package Short Url | https://bioconductor.org/packages/destiny/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |