cytofast
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cytofast.
cytofast - A quick visualization and analysis tool for CyTOF data
Bioconductor version: 3.9
Multi-parametric flow and mass cytometry allows exceptional high-resolution exploration of the cellular composition of the immune system. Together with tools like FlowSOM and Cytosplore it is possible to identify novel cell types. By introducing cytofast we hope to offer a workflow for visualization and quantification of cell clusters for an efficient discovery of cell populations associated with diseases or other clinical outcomes.
Author: K.A. Stam [aut, cre], G. Beyrend [aut]
Maintainer: K.A. Stam <k.a.stam at hotmail.com>
citation("cytofast")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cytofast")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cytofast")| Spitzer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, FlowCytometry, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | flowCore, ggplot2, ggridges, RColorBrewer, reshape2, stats, grDevices, Rdpack, methods, grid, FlowSOM |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cytofast_1.0.0.tar.gz |
| Windows Binary | cytofast_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | cytofast_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cytofast |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cytofast |
| Bioc Package Browser | https://code.bioconductor.org/browse/cytofast/ |
| Package Short Url | https://bioconductor.org/packages/cytofast/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |