cnvGSA
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cnvGSA.
Gene Set Analysis of (Rare) Copy Number Variants
Bioconductor version: 3.9
This package is intended to facilitate gene-set association with rare CNVs in case-control studies.
Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>
Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>
citation("cnvGSA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cnvGSA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cnvGSA")| cnvGSA - Gene-Set Analysis of Rare Copy Number Variants | |
| cnvGSAUsersGuide.pdf | |
| Reference Manual |
Details
| biocViews | MultipleComparison, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | LGPL |
| Depends | brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | cnvGSAdata, org.Hs.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | cnvGSAdata |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cnvGSA_1.28.0.tar.gz |
| Windows Binary | cnvGSA_1.28.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | cnvGSA_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cnvGSA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cnvGSA |
| Bioc Package Browser | https://code.bioconductor.org/browse/cnvGSA/ |
| Package Short Url | https://bioconductor.org/packages/cnvGSA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |