ccmap
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ccmap.
Combination Connectivity Mapping
Bioconductor version: 3.9
Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.
Author: Alex Pickering
Maintainer: Alex Pickering <alexvpickering at gmail.com>
Citation (from within R, enter
citation("ccmap")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ccmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ccmap")
ccmap vignette | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | DifferentialExpression, GeneExpression, Microarray, Software, Transcription |
Version | 1.10.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | AnnotationDbi(>= 1.36.2), BiocManager (>= 1.24.0), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1) |
System Requirements | |
URL |
See More
Suggests | crossmeta, knitr, rmarkdown, testthat, lydata |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | crossmeta |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ccmap_1.10.0.tar.gz |
Windows Binary | ccmap_1.10.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | ccmap_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ccmap |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ccmap |
Bioc Package Browser | https://code.bioconductor.org/browse/ccmap/ |
Package Short Url | https://bioconductor.org/packages/ccmap/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |