cancerclass
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cancerclass.
Development and validation of diagnostic tests from high-dimensional molecular data
Bioconductor version: 3.9
The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.
Author: Jan Budczies, Daniel Kosztyla
Maintainer: Daniel Kosztyla <danielkossi at hotmail.com>
citation("cancerclass")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cancerclass")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cancerclass")| Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data | R Script | |
| Reference Manual |
Details
| biocViews | Cancer, Classification, Microarray, Software, Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL 3 |
| Depends | R (>= 2.14.0), Biobase, binom, methods, stats |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | cancerdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cancerclass_1.28.0.tar.gz |
| Windows Binary | cancerclass_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | cancerclass_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cancerclass |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cancerclass |
| Bioc Package Browser | https://code.bioconductor.org/browse/cancerclass/ |
| Package Short Url | https://bioconductor.org/packages/cancerclass/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |