beadarraySNP
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see beadarraySNP.
Normalization and reporting of Illumina SNP bead arrays
Bioconductor version: 3.9
Importing data from Illumina SNP experiments and performing copy number calculations and reports.
Author: Jan Oosting
Maintainer: Jan Oosting <j.oosting at lumc.nl>
Citation (from within R, enter
citation("beadarraySNP")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beadarraySNP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beadarraySNP")| beadarraySNP.pdf | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel |
| Version | 1.50.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL-2 |
| Depends | methods, Biobase(>= 2.14), quantsmooth |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | aCGH, affy, limma, snapCGH, beadarray, DNAcopy |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | beadarraySNP_1.50.0.tar.gz |
| Windows Binary | beadarraySNP_1.50.0.zip |
| Mac OS X 10.11 (El Capitan) | beadarraySNP_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/beadarraySNP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/beadarraySNP |
| Bioc Package Browser | https://code.bioconductor.org/browse/beadarraySNP/ |
| Package Short Url | https://bioconductor.org/packages/beadarraySNP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |