banocc
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see banocc.
Bayesian ANalysis Of Compositional Covariance
Bioconductor version: 3.9
BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan`. It provides as output the `stanfit` object as well as posterior median and credible interval estimates for each correlation element.
Author: Emma Schwager [aut, cre], Curtis Huttenhower [aut]
Maintainer: George Weingart <george.weingart at gmail.com>, Curtis Huttenhower <chuttenh at hsph.harvard.edu>
citation("banocc")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("banocc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("banocc")| BAnOCC (Bayesian Analysis of Compositional Covariance) | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Bayesian, ImmunoOncology, Metagenomics, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.1), rstan (>= 2.17.4) |
| Imports | coda (>= 0.18.1), mvtnorm, stringr |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, methods, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | banocc_1.8.1.tar.gz |
| Windows Binary | banocc_1.8.1.zip |
| Mac OS X 10.11 (El Capitan) | banocc_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/banocc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/banocc |
| Bioc Package Browser | https://code.bioconductor.org/browse/banocc/ |
| Package Short Url | https://bioconductor.org/packages/banocc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |