affylmGUI
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.
GUI for limma Package with Affymetrix Microarrays
Bioconductor version: 3.9
A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.
Author: James Wettenhall [cre,aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb]
Maintainer: Gordon Smyth <smyth at wehi.edu.au>
citation("affylmGUI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affylmGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affylmGUI")| about.html | HTML | |
| affylmGUI Vignette | R Script | |
| CustMenu.html | HTML | |
| Extracting affy and limma objects from affylmGUI files | ||
| index.html | HTML | |
| windowsFocus.html | HTML | |
| Reference Manual |
Details
| biocViews | BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, BiocManager, R2HTML, xtable |
| System Requirements | |
| URL | http://bioinf.wehi.edu.au/affylmGUI/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affylmGUI_1.58.0.tar.gz |
| Windows Binary | affylmGUI_1.58.0.zip |
| Mac OS X 10.11 (El Capitan) | affylmGUI_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affylmGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affylmGUI |
| Bioc Package Browser | https://code.bioconductor.org/browse/affylmGUI/ |
| Package Short Url | https://bioconductor.org/packages/affylmGUI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |