adSplit
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see adSplit.
Annotation-Driven Clustering
Bioconductor version: 3.9
This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.
Author: Claudio Lottaz, Joern Toedling
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
citation("adSplit")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("adSplit")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("adSplit")| Annotation-Driven Clustering | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, Microarray, Software |
| Version | 1.54.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), methods (>= 2.1.0) |
| Imports | AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0) |
| System Requirements | |
| URL | http://compdiag.molgen.mpg.de/software/index.shtml |
See More
| Suggests | golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | adSplit_1.54.0.tar.gz |
| Windows Binary | adSplit_1.54.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | adSplit_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/adSplit |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/adSplit |
| Bioc Package Browser | https://code.bioconductor.org/browse/adSplit/ |
| Package Short Url | https://bioconductor.org/packages/adSplit/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |