XINA
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see XINA.
Multiplexes isobaric mass tagged-based kinetics data for network analysis
Bioconductor version: 3.9
An intuitive R package simplifies network analyses output from multiplexed high-dimensional proteomics/trascriptomics kinetics data.
Author: Lee, Lang Ho and Singh, Sasha A.
Maintainer: Lang Ho Lee <langholee at gmail.com> and Sasha A. Singh <sasingh at bwh.harvard.edu>
citation("XINA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XINA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XINA")| xina_user_code | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, Network, Proteomics, RNASeq, Software, SystemsBiology |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5), Biobase |
| Imports | mclust, plyr, alluvial, ggplot2, igraph, gridExtra, tools, grDevices, graphics, utils, STRINGdb |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XINA_1.2.0.tar.gz |
| Windows Binary | XINA_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | XINA_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/XINA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XINA |
| Bioc Package Browser | https://code.bioconductor.org/browse/XINA/ |
| Package Short Url | https://bioconductor.org/packages/XINA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |