TSSi
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TSSi.
Transcription Start Site Identification
Bioconductor version: 3.9
Identify and normalize transcription start sites in high-throughput sequencing data.
Author: Julian Gehring, Clemens Kreutz
Maintainer: Julian Gehring <jg-bioc at gmx.com>
Citation (from within R, enter
citation("TSSi")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TSSi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSSi")| Introduction to the TSSi package: Identification of Transcription Start Sites | R Script | |
| Reference Manual |
Details
| biocViews | Genetics, Preprocessing, RNASeq, Sequencing, Software |
| Version | 1.29.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.13.2) |
| Imports | methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | rtracklayer |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TSSi_1.29.0.tar.gz |
| Windows Binary | TSSi_1.29.0.zip |
| Mac OS X 10.11 (El Capitan) | TSSi_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TSSi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TSSi |
| Bioc Package Browser | https://code.bioconductor.org/browse/TSSi/ |
| Package Short Url | https://bioconductor.org/packages/TSSi/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |