TMixClust
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TMixClust.
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
Bioconductor version: 3.9
Implementation of a clustering method for time series gene expression data based on mixed-effects models with Gaussian variables and non-parametric cubic splines estimation. The method can robustly account for the high levels of noise present in typical gene expression time series datasets.
Author: Monica Golumbeanu <golumbeanu.monica at gmail.com>
Maintainer: Monica Golumbeanu <golumbeanu.monica at gmail.com>
citation("TMixClust")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TMixClust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TMixClust")| Clustering time series gene expression data with TMixClust | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GeneExpression, Software, StatisticalMethod, TimeCourse |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.4) |
| Imports | gss, mvtnorm, stats, zoo, cluster, utils, BiocParallel, flexclust, grDevices, graphics, Biobase, SPEM |
| System Requirements | |
| URL |
See More
| Suggests | rmarkdown, knitr, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TMixClust_1.6.0.tar.gz |
| Windows Binary | TMixClust_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | TMixClust_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TMixClust |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TMixClust |
| Bioc Package Browser | https://code.bioconductor.org/browse/TMixClust/ |
| Package Short Url | https://bioconductor.org/packages/TMixClust/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |