TCseq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TCseq.
Time course sequencing data analysis
Bioconductor version: 3.9
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.
Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>
Maintainer: Mengjun Wu <minervajunjun at gmail.com>
citation("TCseq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TCseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TCseq")| TCseq Vignette | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TCseq_1.8.0.tar.gz |
| Windows Binary | TCseq_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | TCseq_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TCseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TCseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/TCseq/ |
| Package Short Url | https://bioconductor.org/packages/TCseq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |