SpacePAC
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SpacePAC.
Identification of Mutational Clusters in 3D Protein Space via Simulation.
Bioconductor version: 3.9
Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.
Author: Gregory Ryslik, Hongyu Zhao
Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>
Citation (from within R, enter
citation("SpacePAC")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpacePAC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpacePAC")| SpacePAC: Identifying mutational clusters in 3D protein space using simulation | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Proteomics, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.15), iPAC |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, rgl |
| Linking To | |
| Enhances | |
| Depends On Me | QuartPAC |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SpacePAC_1.22.0.tar.gz |
| Windows Binary | SpacePAC_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | SpacePAC_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SpacePAC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpacePAC |
| Bioc Package Browser | https://code.bioconductor.org/browse/SpacePAC/ |
| Package Short Url | https://bioconductor.org/packages/SpacePAC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |