SimBindProfiles
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SimBindProfiles.
Similar Binding Profiles
Bioconductor version: 3.9
SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.
Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell
Maintainer: Bettina Fischer <bef22 at cam.ac.uk>
citation("SimBindProfiles")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SimBindProfiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SimBindProfiles")| SimBindProfiles: Similar Binding Profiles, identifies common and unique regions in array genome tiling array data | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), methods, Ringo |
| Imports | limma, mclust, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | |
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| Enhances | |
| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SimBindProfiles_1.22.0.tar.gz |
| Windows Binary | SimBindProfiles_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | SimBindProfiles_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SimBindProfiles |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SimBindProfiles |
| Bioc Package Browser | https://code.bioconductor.org/browse/SimBindProfiles/ |
| Package Short Url | https://bioconductor.org/packages/SimBindProfiles/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |