SemDist
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SemDist.
Information Accretion-based Function Predictor Evaluation
Bioconductor version: 3.9
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
Author: Ian Gonzalez and Wyatt Clark
Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>
citation("SemDist")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SemDist")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SemDist")| introduction.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Classification, GO, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1), AnnotationDbi, GO.db, annotate |
| Imports | |
| System Requirements | |
| URL | http://github.com/iangonzalez/SemDist |
See More
| Suggests | GOSemSim |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SemDist_1.18.0.tar.gz |
| Windows Binary | SemDist_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | SemDist_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SemDist |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SemDist |
| Bioc Package Browser | https://code.bioconductor.org/browse/SemDist/ |
| Package Short Url | https://bioconductor.org/packages/SemDist/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |