SWATH2stats
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SWATH2stats.
Transform and Filter SWATH Data for Statistical Packages
Bioconductor version: 3.9
This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.
Author: Peter Blattmann, Moritz Heusel and Ruedi Aebersold
Maintainer: Peter Blattmann <blattmann at imsb.biol.ethz.ch>
citation("SWATH2stats")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SWATH2stats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SWATH2stats")| SWATH2stats example script | R Script | |
| SWATH2stats package Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, ExperimentalDesign, ImmunoOncology, MassSpectrometry, Preprocessing, Proteomics, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.10.0) |
| Imports | data.table, reshape2, grid, ggplot2, stats, grDevices, graphics, utils, biomaRt |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr |
| Linking To | |
| Enhances | imsbInfer, MSstats, PECA, aLFQ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SWATH2stats_1.14.0.tar.gz |
| Windows Binary | SWATH2stats_1.14.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | SWATH2stats_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SWATH2stats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SWATH2stats |
| Bioc Package Browser | https://code.bioconductor.org/browse/SWATH2stats/ |
| Package Short Url | https://bioconductor.org/packages/SWATH2stats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |