RnaSeqSampleSize
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RnaSeqSampleSize.
RnaSeqSampleSize
Bioconductor version: 3.9
RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data
Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao <zhaoshilin at gmail.com>
citation("RnaSeqSampleSize")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RnaSeqSampleSize")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RnaSeqSampleSize")| RnaSeqSampleSize: Sample size estimation by real data | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, ExperimentalDesign, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), RnaSeqSampleSizeData |
| Imports | biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2) |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RnaSeqSampleSize_1.16.0.tar.gz |
| Windows Binary | RnaSeqSampleSize_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | RnaSeqSampleSize_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RnaSeqSampleSize |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RnaSeqSampleSize |
| Bioc Package Browser | https://code.bioconductor.org/browse/RnaSeqSampleSize/ |
| Package Short Url | https://bioconductor.org/packages/RnaSeqSampleSize/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |