RandomWalkRestartMH
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RandomWalkRestartMH.
Random walk with restart on multiplex and heterogeneous Networks
Bioconductor version: 3.9
This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks". https://www.biorxiv.org/content/early/2017/08/30/134734 .
Author: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>
Maintainer: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>
citation("RandomWalkRestartMH")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RandomWalkRestartMH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RandomWalkRestartMH")| Random Walk with Restart on Multiplex and Heterogeneous Networks | R Script | |
| Reference Manual |
Details
| biocViews | BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0) |
| Imports | igraph, Matrix, dnet, methods |
| System Requirements | |
| URL | https://www.biorxiv.org/content/early/2017/08/30/134734 |
See More
| Suggests | BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RandomWalkRestartMH_1.4.0.tar.gz |
| Windows Binary | RandomWalkRestartMH_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | RandomWalkRestartMH_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RandomWalkRestartMH |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RandomWalkRestartMH |
| Bioc Package Browser | https://code.bioconductor.org/browse/RandomWalkRestartMH/ |
| Package Short Url | https://bioconductor.org/packages/RandomWalkRestartMH/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |