ROTS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ROTS.
Reproducibility-Optimized Test Statistic
Bioconductor version: 3.9
Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.
Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Tomi Suomi <tomi.suomi at utu.fi>
Citation (from within R, enter
citation("ROTS")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ROTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ROTS")
ROTS: Reproducibility Optimized Test Statistic | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3) |
Imports | Rcpp, stats, Biobase, methods |
System Requirements | |
URL |
See More
Suggests | testthat |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | PECA, PowerExplorer |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ROTS_1.12.0.tar.gz |
Windows Binary | ROTS_1.12.0.zip |
Mac OS X 10.11 (El Capitan) | ROTS_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ROTS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ROTS |
Bioc Package Browser | https://code.bioconductor.org/browse/ROTS/ |
Package Short Url | https://bioconductor.org/packages/ROTS/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |