RGSEA

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RGSEA.

Random Gene Set Enrichment Analysis

Bioconductor version: 3.9

Combining bootstrap aggregating and Gene set enrichment analysis (GSEA), RGSEA is a classfication algorithm with high robustness and no over-fitting problem. It performs well especially for the data generated from different exprements.

Author: Chengcheng Ma

Maintainer: Chengcheng Ma <ccma at sibs.ac.cn>

Citation (from within R, enter citation("RGSEA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RGSEA")

Introduction to RGSEA	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, GeneSetEnrichment, Software, StatisticalMethod
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (9.5 years)
License	GPL(>=3)
Depends	R (>= 2.10.0)
Imports	BiocGenerics
System Requirements
URL

Suggests	BiocStyle, GEOquery, knitr, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RGSEA_1.18.0.tar.gz
Windows Binary	RGSEA_1.18.0.zip
Mac OS X 10.11 (El Capitan)	RGSEA_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RGSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RGSEA
Bioc Package Browser	https://code.bioconductor.org/browse/RGSEA/
Package Short Url	https://bioconductor.org/packages/RGSEA/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive