PrecisionTrialDrawer
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PrecisionTrialDrawer.
A Tool to Analyze and Design NGS Based Custom Gene Panels
Bioconductor version: 3.9
A suite of methods to design umbrella and basket trials for preision oncology.
Author: Giorgio Melloni , Alessandro Guida, Luca Mazzarella
Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>
citation("PrecisionTrialDrawer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PrecisionTrialDrawer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PrecisionTrialDrawer")| Bioconductor style for HTML documents | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | graphics, grDevices, stats, utils, methods, cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PrecisionTrialDrawer_1.0.1.tar.gz |
| Windows Binary | PrecisionTrialDrawer_1.0.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | PrecisionTrialDrawer_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer |
| Bioc Package Browser | https://code.bioconductor.org/browse/PrecisionTrialDrawer/ |
| Package Short Url | https://bioconductor.org/packages/PrecisionTrialDrawer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |