PROPER
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PROPER.
PROspective Power Evaluation for RNAseq
Bioconductor version: 3.9
This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.
Author: Hao Wu
Maintainer: Hao Wu <hao.wu at emory.edu>
Citation (from within R, enter
citation("PROPER")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PROPER")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PROPER")| Power and Sample size analysis for gene expression from RNA-seq | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL |
| Depends | R (>= 3.3) |
| Imports | edgeR |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, DESeq, DSS, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PROPER_1.16.0.tar.gz |
| Windows Binary | PROPER_1.16.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | PROPER_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PROPER |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PROPER |
| Bioc Package Browser | https://code.bioconductor.org/browse/PROPER/ |
| Package Short Url | https://bioconductor.org/packages/PROPER/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |