PANR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PANR.
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Bioconductor version: 3.9
This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.
Author: Xin Wang <xin_wang at hms.harvard.edu>
Maintainer: Xin Wang <xin_wang at hms.harvard.edu>
citation("PANR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PANR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PANR")| Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14), igraph |
| Imports | graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR |
| System Requirements | |
| URL |
See More
| Suggests | snow |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | Mulder2012 |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PANR_1.30.0.tar.gz |
| Windows Binary | PANR_1.30.0.zip |
| Mac OS X 10.11 (El Capitan) | PANR_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PANR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PANR |
| Bioc Package Browser | https://code.bioconductor.org/browse/PANR/ |
| Package Short Url | https://bioconductor.org/packages/PANR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |