OPWeight
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OPWeight.
Optimal p-value weighting with independent information
Bioconductor version: 3.9
This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.
Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]
Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>
citation("OPWeight")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OPWeight")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OPWeight")| Introduction to OPWeight | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0) |
| Imports | graphics, qvalue, MASS, tibble, stats |
| System Requirements | |
| URL | https://github.com/mshasan/OPWeight |
See More
| Suggests | airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OPWeight_1.6.0.tar.gz |
| Windows Binary | OPWeight_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | OPWeight_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OPWeight |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OPWeight |
| Bioc Package Browser | https://code.bioconductor.org/browse/OPWeight/ |
| Package Short Url | https://bioconductor.org/packages/OPWeight/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |