OCplus
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OCplus.
Operating characteristics plus sample size and local fdr for microarray experiments
Bioconductor version: 3.9
This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).
Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>
Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>
citation("OCplus")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OCplus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OCplus")| OCplus Introduction | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | LGPL |
| Depends | R (>= 2.1.0) |
| Imports | multtest(>= 1.7.3), graphics, grDevices, stats, akima |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OCplus_1.58.0.tar.gz |
| Windows Binary | OCplus_1.58.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | OCplus_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OCplus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OCplus |
| Bioc Package Browser | https://code.bioconductor.org/browse/OCplus/ |
| Package Short Url | https://bioconductor.org/packages/OCplus/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |