NTW
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see NTW.
Predict gene network using an Ordinary Differential Equation (ODE) based method
Bioconductor version: 3.9
This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.
Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini
Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>
citation("NTW")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NTW")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NTW")| NTW vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Preprocessing, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.3.0) |
| Imports | mvtnorm, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NTW_1.34.0.tar.gz |
| Windows Binary | NTW_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | NTW_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NTW |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NTW |
| Bioc Package Browser | https://code.bioconductor.org/browse/NTW/ |
| Package Short Url | https://bioconductor.org/packages/NTW/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |