MiChip
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MiChip.
MiChip Parsing and Summarizing Functions
Bioconductor version: 3.9
This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.
Author: Jonathon Blake <blake at embl.de>
Maintainer: Jonathon Blake <blake at embl.de>
citation("MiChip")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MiChip")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiChip")| MiChip miRNA Microarray Processing | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.3.0), Biobase |
| Imports | Biobase |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MiChip_1.38.0.tar.gz |
| Windows Binary | MiChip_1.38.0.zip |
| Mac OS X 10.11 (El Capitan) | MiChip_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MiChip |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiChip |
| Bioc Package Browser | https://code.bioconductor.org/browse/MiChip/ |
| Package Short Url | https://bioconductor.org/packages/MiChip/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |