MetaCyto
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MetaCyto.
MetaCyto: A package for meta-analysis of cytometry data
Bioconductor version: 3.9
This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.
Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte
Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>
citation("MetaCyto")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaCyto")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaCyto")| Vignette Title | HTML | R Script |
| Reference Manual |
Details
| biocViews | CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Preprocessing, Software, StatisticalMethod |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaCyto_1.6.0.tar.gz |
| Windows Binary | MetaCyto_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | MetaCyto_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaCyto |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaCyto |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaCyto/ |
| Package Short Url | https://bioconductor.org/packages/MetaCyto/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |