MetID
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MetID.
Network-based prioritization of putative metabolite IDs
Bioconductor version: 3.9
This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.
Author: Zhenzhi Li <zzrickli at gmail.com>
Maintainer: Zhenzhi Li <zzrickli at gmail.com>
Citation (from within R, enter
citation("MetID")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetID")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetID")
Introduction to MetID | HTML | R Script |
Reference Manual |
Details
biocViews | AssayDomain, BiologicalQuestion, Infrastructure, KEGG, Network, ResearchField, Software, StatisticalMethod, Technology, WorkflowStep |
Version | 1.2.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5) |
Imports | utils (>= 3.3.1), stats (>= 3.4.2), devtools (>= 1.13.0), stringr (>= 1.3.0), Matrix (>= 1.2-12), igraph (>= 1.2.1), ChemmineR(>= 2.30.2) |
System Requirements | |
URL | https://github.com/ressomlab/MetID |
See More
Suggests | knitr (>= 1.19), rmarkdown (>= 1.8) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MetID_1.2.0.tar.gz |
Windows Binary | MetID_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | MetID_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetID |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetID |
Bioc Package Browser | https://code.bioconductor.org/browse/MetID/ |
Package Short Url | https://bioconductor.org/packages/MetID/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |