MSGFgui
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MSGFgui.
A shiny GUI for MSGFplus
Bioconductor version: 3.9
This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
citation("MSGFgui")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSGFgui")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSGFgui")| Using MSGFgui | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 2) |
| Depends | mzR, xlsx |
| Imports | shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSGFgui_1.18.0.tar.gz |
| Windows Binary | MSGFgui_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | MSGFgui_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSGFgui |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSGFgui |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSGFgui/ |
| Package Short Url | https://bioconductor.org/packages/MSGFgui/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |