MLSeq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MLSeq.
Machine Learning Interface for RNA-Seq Data
Bioconductor version: 3.9
This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.
Author: Gokmen Zararsiz [aut, cre], Dincer Goksuluk [aut], Selcuk Korkmaz [aut], Vahap Eldem [aut], Izzet Parug Duru [ctb], Ahmet Ozturk [aut], Ahmet Ergun Karaagaoglu [aut, ths]
Maintainer: Gokmen Zararsiz <gokmenzararsiz at hotmail.com>
citation("MLSeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MLSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MLSeq")| Beginner's guide to the "MLSeq" package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 2.2.1 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL(>=2) |
| Depends | caret, ggplot2 |
| Imports | methods, DESeq2, edgeR, limma, Biobase, SummarizedExperiment, plyr, foreach, utils, sSeq, xtable |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat, BiocStyle, VennDiagram, pamr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | GARS |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MLSeq_2.2.1.tar.gz |
| Windows Binary | MLSeq_2.2.1.zip |
| Mac OS X 10.11 (El Capitan) | MLSeq_2.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MLSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MLSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/MLSeq/ |
| Package Short Url | https://bioconductor.org/packages/MLSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |