KinSwingR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see KinSwingR.
KinSwingR: network-based kinase activity prediction
Bioconductor version: 3.9
KinSwingR integrates phosphosite data derived from mass-spectrometry data and kinase-substrate predictions to predict kinase activity. Several functions allow the user to build PWM models of kinase-subtrates, statistically infer PWM:substrate matches, and integrate these data to infer kinase activity.
Author: Ashley J. Waardenberg [aut, cre]
Maintainer: Ashley J. Waardenberg <a.waardenberg at gmail.com>
citation("KinSwingR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KinSwingR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KinSwingR")| KinSwingR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Network, Proteomics, SequenceMatching, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | data.table, BiocParallel, sqldf, stats, grid, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KinSwingR_1.2.0.tar.gz |
| Windows Binary | KinSwingR_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | KinSwingR_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KinSwingR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KinSwingR |
| Bioc Package Browser | https://code.bioconductor.org/browse/KinSwingR/ |
| Package Short Url | https://bioconductor.org/packages/KinSwingR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |