IMMAN
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see IMMAN.
Interlog protein network reconstruction by Mapping and Mining ANalysis
Bioconductor version: 3.9
Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.
Author: Minoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari
Maintainer: Minoo Ashtiani <ashtiani.minoo at gmail.com>
citation("IMMAN")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IMMAN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IMMAN")| IMMAN | HTML | R Script |
| Reference Manual |
Details
| biocViews | Alignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | STRINGdb, Biostrings, igraph, graphics, utils, seqinr |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IMMAN_1.4.0.tar.gz |
| Windows Binary | IMMAN_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | IMMAN_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IMMAN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IMMAN |
| Bioc Package Browser | https://code.bioconductor.org/browse/IMMAN/ |
| Package Short Url | https://bioconductor.org/packages/IMMAN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |