GeneticsPed
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GeneticsPed.
Pedigree and genetic relationship functions
Bioconductor version: 3.9
Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!
Author: Gregor Gorjanc and David A. Henderson <DNADavenator at GMail.Com>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)
Maintainer: David Henderson <DNADavenator at GMail.Com>
citation("GeneticsPed")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneticsPed")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneticsPed")| Calculation of genetic relatedness/relationship between individuals in the pedigree | R Script | |
| Pedigree handling | R Script | |
| Quantitative genetic (animal) model example in R | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Genetics, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | LGPL (>= 2.1) | file LICENSE |
| Depends | R (>= 2.4.0), MASS |
| Imports | gdata, genetics |
| System Requirements | |
| URL | http://rgenetics.org |
See More
| Suggests | RUnit, gtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneticsPed_1.46.0.tar.gz |
| Windows Binary | GeneticsPed_1.46.0.zip |
| Mac OS X 10.11 (El Capitan) | GeneticsPed_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneticsPed |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneticsPed |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneticsPed/ |
| Package Short Url | https://bioconductor.org/packages/GeneticsPed/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |