GeneStructureTools
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GeneStructureTools.
Tools for spliced gene structure manipulation and analysis
Bioconductor version: 3.9
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.
Author: Beth Signal
Maintainer: Beth Signal <b.signal at garvan.org.au>
Citation (from within R, enter
citation("GeneStructureTools")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneStructureTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneStructureTools")| Introduction to GeneStructureTools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | BSD_3_clause + file LICENSE |
| Depends | |
| Imports | Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneStructureTools_1.4.0.tar.gz |
| Windows Binary | GeneStructureTools_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GeneStructureTools_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneStructureTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneStructureTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneStructureTools/ |
| Package Short Url | https://bioconductor.org/packages/GeneStructureTools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |