GSCA
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GSCA.
GSCA: Gene Set Context Analysis
Bioconductor version: 3.9
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
citation("GSCA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSCA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSCA")| GSCA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, GeneExpression, Software, Visualization |
| Version | 2.14.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL(>=2) |
| Depends | shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0) |
| Imports | graphics |
| System Requirements | |
| URL |
See More
| Suggests | Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSCA_2.14.0.tar.gz |
| Windows Binary | GSCA_2.14.0.zip |
| Mac OS X 10.11 (El Capitan) | GSCA_2.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSCA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSCA |
| Bioc Package Browser | https://code.bioconductor.org/browse/GSCA/ |
| Package Short Url | https://bioconductor.org/packages/GSCA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |