GEM
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GEM.
GEM: fast association study for the interplay of Gene, Environment and Methylation
Bioconductor version: 3.9
Tools for analyzing EWAS, methQTL and GxE genome widely.
Author: Hong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh
Maintainer: Hong Pan <pan_hong at sics.a-star.edu.sg>
Citation (from within R, enter
citation("GEM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEM")| The GEM User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, GUI, GeneExpression, GenomeWideAssociation, MethylSeq, MethylationArray, Regression, SNP, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3) |
| Imports | tcltk, ggplot2, methods, stats, grDevices, graphics, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, RUnit, testthat, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GEM_1.10.0.tar.gz |
| Windows Binary | GEM_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | GEM_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GEM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GEM |
| Bioc Package Browser | https://code.bioconductor.org/browse/GEM/ |
| Package Short Url | https://bioconductor.org/packages/GEM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |