FCBF
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FCBF.
Fast Correlation Based Filter for Feature Selection
Bioconductor version: 3.9
This package provides a simple R implementation for the Fast Correlation Based Filter described in Yu, L. and Liu, H.; Feature Selection for High-Dimensional Data: A Fast Correlation Based Filter Solution,Proc. 20th Intl. Conf. Mach. Learn. (ICML-2003), Washington DC, 2003 The current package is an intent to make easier for bioinformaticians to use FCBF for feature selection, especially regarding transcriptomic data.This implies discretizing expression (function discretize_exprs) before calculating the features that explain the class, but are not predictable by other features. The functions are implemented based on the algorithm of Yu and Liu, 2003 and Rajarshi Guha's implementation from 13/05/2005 available (as of 26/08/2018) at http://www.rguha.net/code/R/fcbf.R .
Author: Tiago Lubiana [aut, cre], Helder Nakaya [aut, ths]
Maintainer: Tiago Lubiana <tiago.lubiana.alves at usp.br>
citation("FCBF")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FCBF")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FCBF")| FCBF : Fast Correlation Based Filter for Feature Selection | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Classification, FeatureExtraction, GeneExpression, GeneTarget, ImmunoOncology, SingleCell, Software |
| Version | 1.2.5 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6) |
| Imports | ggplot2, gridExtra, pbapply, parallel, SummarizedExperiment, stats, mclust |
| System Requirements | |
| URL |
See More
| Suggests | caret, mlbench, SingleCellExperiment, knitr, rmarkdown, testthat, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FCBF_1.2.5.tar.gz |
| Windows Binary | FCBF_1.2.5.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | FCBF_1.2.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FCBF |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FCBF |
| Bioc Package Browser | https://code.bioconductor.org/browse/FCBF/ |
| Package Short Url | https://bioconductor.org/packages/FCBF/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |