DiffLogo
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DiffLogo.
DiffLogo: A comparative visualisation of biooligomer motifs
Bioconductor version: 3.9
DiffLogo is an easy-to-use tool to visualize motif differences.
Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))
Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>
citation("DiffLogo")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DiffLogo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DiffLogo")| Basics of the DiffLogo package | R Script | |
| Reference Manual |
Details
| biocViews | Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization |
| Version | 2.8.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4), stats, cba |
| Imports | grDevices, graphics, utils, tools |
| System Requirements | |
| URL | https://github.com/mgledi/DiffLogo/ |
| Bug Reports | https://github.com/mgledi/DiffLogo/issues |
See More
| Suggests | knitr, testthat, seqLogo, MotifDb |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DiffLogo_2.8.0.tar.gz |
| Windows Binary | DiffLogo_2.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | DiffLogo_2.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DiffLogo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DiffLogo |
| Bioc Package Browser | https://code.bioconductor.org/browse/DiffLogo/ |
| Package Short Url | https://bioconductor.org/packages/DiffLogo/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |