CoRegFlux
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CoRegFlux.
CoRegFlux
Bioconductor version: 3.9
CoRegFlux aims at providing tools to integrate reverse engineered gene regulatory networks and gene-expression into metabolic models to improve prediction of phenotypes, both for metabolic engineering, through transcription factor or gene (TF) knock-out or overexpression in various conditions as well as to improve our understanding of the interactions and cell inner-working.
Author: Pauline Trébulle, Daniel Trejo-Banos, Mohamed Elati
Maintainer: Pauline Trébulle and Mohamed Elati <coregflux at gmail.com>
citation("CoRegFlux")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CoRegFlux")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoRegFlux")| CoRegFlux | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, GenePrediction, GeneRegulation, Network, Software, SystemsBiology, Transcription |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | CoRegNet, sybil |
| System Requirements | GLPK (>= 4.42) |
| URL |
See More
| Suggests | glpkAPI, testthat, knitr, rmarkdown, digest, R.cache, ggplot2, plyr, igraph, methods, latex2exp, rBayesianOptimization |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CoRegFlux_1.0.0.tar.gz |
| Windows Binary | CoRegFlux_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | CoRegFlux_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CoRegFlux |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CoRegFlux |
| Bioc Package Browser | https://code.bioconductor.org/browse/CoRegFlux/ |
| Package Short Url | https://bioconductor.org/packages/CoRegFlux/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |