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CGEN

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CGEN.

An R package for analysis of case-control studies in genetic epidemiology


Bioconductor version: 3.9

An R package for analysis of case-control studies in genetic epidemiology.

Author: Samsiddhi Bhattacharjee, Nilanjan Chatterjee, Summer Han, Minsun Song and William Wheeler

Maintainer: William Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("CGEN")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGEN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGEN")
CGEN Scan Vignette PDF R Script
CGEN Vignette PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, MultipleComparisons, SNP, Software
Version 3.20.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL-2 + file LICENSE
Depends R (>= 2.10.1), survival, mvtnorm
Imports
System Requirements
URL
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Suggests cluster
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGEN_3.20.0.tar.gz
Windows Binary CGEN_3.20.0.zip
Mac OS X 10.11 (El Capitan) CGEN_3.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGEN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGEN
Bioc Package Browser https://code.bioconductor.org/browse/CGEN/
Package Short Url https://bioconductor.org/packages/CGEN/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive