BEARscc
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BEARscc.
BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)
Bioconductor version: 3.9
BEARscc is a noise estimation and injection tool that is designed to assess putative single-cell RNA-seq clusters in the context of experimental noise estimated by ERCC spike-in controls.
Author: David T. Severson <david_severson at hms.harvard.edu>
Maintainer: Benjamin Schuster-Boeckler <benjamin.schuster-boeckler at ludwig.ox.ac.uk>
citation("BEARscc")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BEARscc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BEARscc")| Vignette Title | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, ImmunoOncology, SingleCell, Software, Transcriptomics |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | |
| Imports | ggplot2, SingleCellExperiment, data.table, stats, utils, graphics, compiler |
| System Requirements | |
| URL |
See More
| Suggests | testthat, cowplot, knitr, rmarkdown, BiocStyle, NMF |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BEARscc_1.4.0.tar.gz |
| Windows Binary | BEARscc_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | BEARscc_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BEARscc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BEARscc |
| Bioc Package Browser | https://code.bioconductor.org/browse/BEARscc/ |
| Package Short Url | https://bioconductor.org/packages/BEARscc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |