AMOUNTAIN
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AMOUNTAIN.
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
Bioconductor version: 3.9
A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.
Author: Dong Li, Shan He, Zhisong Pan and Guyu Hu
Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>
citation("AMOUNTAIN")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AMOUNTAIN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AMOUNTAIN")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Network, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0) |
| Imports | stats |
| System Requirements | gsl |
| URL |
See More
| Suggests | BiocStyle, qgraph, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MODA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AMOUNTAIN_1.10.0.tar.gz |
| Windows Binary | AMOUNTAIN_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | AMOUNTAIN_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AMOUNTAIN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AMOUNTAIN |
| Bioc Package Browser | https://code.bioconductor.org/browse/AMOUNTAIN/ |
| Package Short Url | https://bioconductor.org/packages/AMOUNTAIN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |