ceu1kg

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ceu1kgv.

CEU (N=60) genotypes from 1000 genomes pilot phase I


Bioconductor version: 3.7

CEU genotypes from 1000 genomes "low coverage" pilot phase I (approx 8 million SNP calls released July 2010); includes Wellcome trust GENEVAR expression for 43 indiv

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ceu1kg")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ceu1kg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ceu1kg")
ceu1kg overview PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, HapMap, Project1000genomes, SNPData
Version 0.18.0
License Artistic-2.0
Depends R (>= 2.12.0), GGBase(>= 3.9.0), GGtools, Biobase
Imports
System Requirements
URL
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Suggests SNPlocs.Hsapiens.dbSNP.20101109
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ceu1kg_0.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/ceu1kg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ceu1kg
Package Short Url https://bioconductor.org/packages/ceu1kg/
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