## ----eval=TRUE, message=FALSE, warning = FALSE, results = "hide"---------
# Load results from previous sections
mae <- get(load("mae.rda"))

## ----results='hide', echo=TRUE, message=FALSE, warning=FALSE, fig.width=10, fig.height=5, fig.cap="Heatmap of paired pairs."----

pair <- read.csv("result/getPair.hypo.pairs.significant.csv")

heatmapPairs(data = mae, 
             group.col = "definition",
             group1 = "Primary solid Tumor", 
             annotation.col = c("years_smoked","gender"),
             group2 = "Solid Tissue Normal",
             pairs = pair,
             filename =  NULL)