switchBox

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see switchBox.

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm


Bioconductor version: 3.7

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Citation (from within R, enter citation("switchBox")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")
Working with the switchBox package PDF R Script
Reference Manual PDF

Details

biocViews Classification, Software, StatisticalMethod
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 2.13.1), pROC, gplots
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchBox_1.16.0.tar.gz
Windows Binary switchBox_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) switchBox_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchBox
Package Short Url https://bioconductor.org/packages/switchBox/
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Old Source Packages for BioC 3.7 Source Archive