sigPathway
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigPathway.
Pathway Analysis
Bioconductor version: 3.7
Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)
Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)
Maintainer: Weil Lai <wlai at alum.mit.edu>
citation("sigPathway")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sigPathway")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigPathway")
sigPathway | R Script | |
Reference Manual |
Details
biocViews | DifferentialExpression, MultipleComparison, Software |
Version | 1.48.0 |
In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
System Requirements | |
URL | http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html |
See More
Suggests | hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12) |
Linking To | |
Enhances | |
Depends On Me | tRanslatome |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | sigPathway_1.48.0.tar.gz |
Windows Binary | sigPathway_1.48.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | sigPathway_1.48.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sigPathway |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sigPathway |
Package Short Url | https://bioconductor.org/packages/sigPathway/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |