sevenbridges
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
Bioconductor version: 3.7
R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.
Author: Nan Xiao [aut, cre], Tengfei Yin [aut], Emile Young [ctb], Dusan Randjelovic [aut], Seven Bridges Genomics [cph, fnd]
Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>
citation("sevenbridges")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sevenbridges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sevenbridges")
Complete Guide for Seven Bridges API R Client | HTML | R Script |
Creating Your Docker Container and Command Line Interface (with docopt) | HTML | R Script |
Describe and Execute CWL Tools/Workflows in R | HTML | R Script |
Find Data on CGC via Data Exploerer, SPARQL, and Datasets API | HTML | R Script |
IDE Container: RStudio Server, Shiny Server, and More | HTML | R Script |
Master Tutorial: Use R for Cancer Genomics Cloud | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, Software, ThirdPartyClient |
Version | 1.10.5 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | Apache License 2.0 | file LICENSE |
Depends | methods, utils, stats |
Imports | httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, dplyr, shiny (>= 0.13), miniUI (>= 0.1.1), rstudioapi (>= 0.5) |
System Requirements | |
URL | https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r |
Bug Reports | https://github.com/sbg/sevenbridges-r/issues |
See More
Suggests | knitr, rmarkdown, testthat, readr, clipr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | sevenbridges_1.10.5.tar.gz |
Windows Binary | sevenbridges_1.10.5.zip |
Mac OS X 10.11 (El Capitan) | sevenbridges_1.10.5.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sevenbridges |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sevenbridges |
Bioc Package Browser | https://code.bioconductor.org/browse/sevenbridges/ |
Package Short Url | https://bioconductor.org/packages/sevenbridges/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |